figure-generation

Generate publication-quality scientific figures using matplotlib/seaborn with a three-phase pipeline (query expansion, code generation with execution, VLM…

INSTALLATION
npx skills add https://github.com/lingzhi227/agent-research-skills --skill figure-generation
Run in your project or agent environment. Adjust flags if your CLI version differs.

SKILL.md

$2b

Three-Phase Pipeline (from MatPlotAgent)

Phase 1: Query Expansion

Expand the user's figure description into step-by-step coding specifications using the prompts in references/figure-prompts.md. Determine: figure type, data mapping (x/y/color/hue), style requirements, paper conventions.

Phase 2: Code Generation with Execution Loop (up to 4 retries)

  • Generate a self-contained Python script using the template from scripts/figure_template.py as a starting point
  • Write script to a temp file and execute: python figure_script.py
  • If error: capture traceback, feed back, regenerate (see ERROR_PROMPT in references)
  • If no .png produced: add explicit save instruction, retry
  • On success: report the generated figure path

Phase 3: Visual Refinement

Read the generated PNG file and visually inspect using the VLM feedback prompts from references/figure-prompts.md:

  • Does the figure type match the request?
  • Are labels, titles, and legends correct?
  • Is the color scheme appropriate and consistent?
  • Are axis scales sensible? Is text readable at publication size?

If improvements needed: generate corrective instructions and re-execute.

References

  • All MatPlotAgent prompts: ~/.claude/skills/figure-generation/references/figure-prompts.md
  • Figure templates: ~/.claude/skills/figure-generation/scripts/figure_template.py

Output

Both PNG (preview, 300 DPI) and PDF (vector, for paper) formats. Plus the LaTeX include code:

\begin{figure}[t]

    \centering

    \includegraphics[width=\linewidth]{figures/figure_name.pdf}

    \caption{Description. Best viewed in color.}

    \label{fig:figure_name}

\end{figure}

Quality Requirements

  • DPI ≥ 300, or vector PDF
  • Colorblind-friendly palette (no red-green only)
  • All text ≥ 8pt at print size
  • Consistent styling across all paper figures
  • No matplotlib default title — use LaTeX caption

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