two-factor-authentication-best-practices

Multi-factor authentication with TOTP, OTP, backup codes, and trusted device management for Better Auth. Supports three verification methods: authenticator apps (TOTP with QR codes), email/SMS codes (OTP), and single-use backup codes Handles complete 2FA sign-in flows with automatic session management, temporary 2FA cookies, and trusted device tracking with configurable expiration Built-in security features including rate limiting (3 requests per 10 seconds), encryption at rest for secrets and backup codes, and constant-time code comparison Configurable code parameters: TOTP digits (6 or 8), OTP validity period, backup code count and length, and custom encryption for OTP storage

INSTALLATION
npx skills add https://github.com/better-auth/skills --skill two-factor-authentication-best-practices
Run in your project or agent environment. Adjust flags if your CLI version differs.

SKILL.md

Setup

  • Add twoFactor() plugin to server config with issuer
  • Add twoFactorClient() plugin to client config
  • Run npx @better-auth/cli migrate
  • Verify: check that twoFactorSecret column exists on user table
import { betterAuth } from "better-auth";

import { twoFactor } from "better-auth/plugins";

export const auth = betterAuth({

appName: "My App",

plugins: [

twoFactor({

issuer: "My App",

}),

],

});

### Client-Side Setup

import { createAuthClient } from "better-auth/client";

import { twoFactorClient } from "better-auth/client/plugins";

export const authClient = createAuthClient({

plugins: [

twoFactorClient({

onTwoFactorRedirect() {

window.location.href = "/2fa";

},

}),

],

});


## Enabling 2FA for Users

Requires password verification. Returns TOTP URI (for QR code) and backup codes.

const enable2FA = async (password: string) => {

const { data, error } = await authClient.twoFactor.enable({

password,

});

if (data) {

// data.totpURI — generate a QR code from this

// data.backupCodes — display to user

}

};


`twoFactorEnabled` is not set to `true` until first TOTP verification succeeds. Override with `skipVerificationOnEnable: true` (not recommended).

## TOTP (Authenticator App)

### Displaying the QR Code

import QRCode from "react-qr-code";

const TotpSetup = ({ totpURI }: { totpURI: string }) => {

return <QRCode value={totpURI} />;

};


### Verifying TOTP Codes

Accepts codes from one period before/after current time:

const verifyTotp = async (code: string) => {

const { data, error } = await authClient.twoFactor.verifyTotp({

code,

trustDevice: true,

});

};


### TOTP Configuration Options

twoFactor({

totpOptions: {

digits: 6, // 6 or 8 digits (default: 6)

period: 30, // Code validity period in seconds (default: 30)

},

});


## OTP (Email/SMS)

### Configuring OTP Delivery

import { betterAuth } from "better-auth";

import { twoFactor } from "better-auth/plugins";

import { sendEmail } from "./email";

export const auth = betterAuth({

plugins: [

twoFactor({

otpOptions: {

sendOTP: async ({ user, otp }, ctx) => {

await sendEmail({

to: user.email,

subject: "Your verification code",

text: Your code is: ${otp},

});

},

period: 5, // Code validity in minutes (default: 3)

digits: 6, // Number of digits (default: 6)

allowedAttempts: 5, // Max verification attempts (default: 5)

},

}),

],

});


### Sending and Verifying OTP

Send: `authClient.twoFactor.sendOtp()`. Verify: `authClient.twoFactor.verifyOtp({ code, trustDevice: true })`.

### OTP Storage Security

Configure how OTP codes are stored in the database:

twoFactor({

otpOptions: {

storeOTP: "encrypted", // Options: "plain", "encrypted", "hashed"

},

});


For custom encryption:

twoFactor({

otpOptions: {

storeOTP: {

encrypt: async (token) => myEncrypt(token),

decrypt: async (token) => myDecrypt(token),

},

},

});


## Backup Codes

Generated automatically when 2FA is enabled. Each code is single-use.

### Displaying Backup Codes

const BackupCodes = ({ codes }: { codes: string[] }) => {

return (

<div>

<p>Save these codes in a secure location:</p>

<ul>

{codes.map((code, i) => (

<li key={i}>{code}</li>

))}

</ul>

</div>

);

};


### Regenerating Backup Codes

Invalidates all previous codes:

const regenerateBackupCodes = async (password: string) => {

const { data, error } = await authClient.twoFactor.generateBackupCodes({

password,

});

// data.backupCodes contains the new codes

};


### Using Backup Codes for Recovery

const verifyBackupCode = async (code: string) => {

const { data, error } = await authClient.twoFactor.verifyBackupCode({

code,

trustDevice: true,

});

};


### Backup Code Configuration

twoFactor({

backupCodeOptions: {

amount: 10, // Number of codes to generate (default: 10)

length: 10, // Length of each code (default: 10)

storeBackupCodes: "encrypted", // Options: "plain", "encrypted"

},

});


## Handling 2FA During Sign-In

Response includes `twoFactorRedirect: true` when 2FA is required:

### Sign-In Flow

- Call `signIn.email({ email, password })`

- Check `context.data.twoFactorRedirect` in `onSuccess`

- If `true`, redirect to `/2fa` verification page

- Verify via TOTP, OTP, or backup code

- Session cookie is created on successful verification

const signIn = async (email: string, password: string) => {

const { data, error } = await authClient.signIn.email(

{ email, password },

{

onSuccess(context) {

if (context.data.twoFactorRedirect) {

window.location.href = "/2fa";

}

},

}

);

};


Server-side: check `"twoFactorRedirect" in response` when using `auth.api.signInEmail`.

## Trusted Devices

Pass `trustDevice: true` when verifying. Default trust duration: 30 days (`trustDeviceMaxAge`). Refreshes on each sign-in.

## Security Considerations

### Session Management

Flow: credentials → session removed → temporary 2FA cookie (10 min default) → verify → session created.

twoFactor({

twoFactorCookieMaxAge: 600, // 10 minutes in seconds (default)

});


### Rate Limiting

Built-in: 3 requests per 10 seconds for all 2FA endpoints. OTP has additional attempt limiting:

twoFactor({

otpOptions: {

allowedAttempts: 5, // Max attempts per OTP code (default: 5)

},

});


### Encryption at Rest

TOTP secrets: encrypted with auth secret. Backup codes: encrypted by default. OTP: configurable (`"plain"`, `"encrypted"`, `"hashed"`). Uses constant-time comparison for verification.

2FA can only be enabled for credential (email/password) accounts.

## Disabling 2FA

Requires password confirmation. Revokes trusted device records:

const disable2FA = async (password: string) => {

const { data, error } = await authClient.twoFactor.disable({

password,

});

};


## Complete Configuration Example

import { betterAuth } from "better-auth";

import { twoFactor } from "better-auth/plugins";

import { sendEmail } from "./email";

export const auth = betterAuth({

appName: "My App",

plugins: [

twoFactor({

// TOTP settings

issuer: "My App",

totpOptions: {

digits: 6,

period: 30,

},

// OTP settings

otpOptions: {

sendOTP: async ({ user, otp }) => {

await sendEmail({

to: user.email,

subject: "Your verification code",

text: Your code is: ${otp},

});

},

period: 5,

allowedAttempts: 5,

storeOTP: "encrypted",

},

// Backup code settings

backupCodeOptions: {

amount: 10,

length: 10,

storeBackupCodes: "encrypted",

},

// Session settings

twoFactorCookieMaxAge: 600, // 10 minutes

trustDeviceMaxAge: 30 24 60 * 60, // 30 days

}),

],

});

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