SKILL.md
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Each category maps to a Jest test path pattern. The CI pipeline runs CRITICAL gates with --bail (stop on first failure) and enforces coverage thresholds with --coverage --coverageThreshold.
Eval Categories
1. CDSS Accuracy (CRITICAL — 100% required)
Tests all clinical decision support logic: drug interaction pairs (both directions), dose validation rules, clinical scoring vs published specs, no false negatives, no silent failures.
npx jest --testPathPattern='tests/cdss' --bail --ci --coverage
2. PHI Exposure (CRITICAL — 100% required)
Tests for protected health information leaks: API error responses, console output, URL parameters, browser storage, cross-facility isolation, unauthenticated access, service role key absence.
npx jest --testPathPattern='tests/security/phi' --bail --ci
3. Data Integrity (CRITICAL — 100% required)
Tests clinical data safety: locked encounters, audit trail entries, cascade delete protection, concurrent edit handling, no orphaned records.
npx jest --testPathPattern='tests/data-integrity' --bail --ci
4. Clinical Workflow (HIGH — 95%+ required)
Tests end-to-end flows: encounter lifecycle, template rendering, medication sets, drug/diagnosis search, prescription PDF, red flag alerts.
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$tmp_json" || true
total=$(jq '.numTotalTests // 0' "$tmp_json")
passed=$(jq '.numPassedTests // 0' "$tmp_json")
if [ "$total" -eq 0 ]; then
echo "No clinical tests found" >&2
exit 1
fi
rate=$(echo "scale=2; $passed * 100 / $total" | bc)
echo "Clinical pass rate: ${rate}% ($passed/$total)"
5. Integration Compliance (HIGH — 95%+ required)
Tests external systems: HL7 message parsing (v2.x), FHIR validation, lab result mapping, malformed message handling.
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/integration' --ci --json --outputFile="$tmp_json" || true
total=$(jq '.numTotalTests // 0' "$tmp_json")
passed=$(jq '.numPassedTests // 0' "$tmp_json")
if [ "$total" -eq 0 ]; then
echo "No integration tests found" >&2
exit 1
fi
rate=$(echo "scale=2; $passed * 100 / $total" | bc)
echo "Integration pass rate: ${rate}% ($passed/$total)"
Pass/Fail Matrix
Category
Threshold
On Failure
CDSS Accuracy
100%
BLOCK deployment
PHI Exposure
100%
BLOCK deployment
Data Integrity
100%
BLOCK deployment
Clinical Workflow
95%+
WARN, allow with review
Integration
95%+
WARN, allow with review
CI/CD Integration
name: Healthcare Safety Gate
on: [push, pull_request]
jobs:
safety-gate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
with:
node-version: '20'
- run: npm ci
# CRITICAL gates — 100% required, bail on first failure
- name: CDSS Accuracy
run: npx jest --testPathPattern='tests/cdss' --bail --ci --coverage --coverageThreshold='{"global":{"branches":80,"functions":80,"lines":80}}'
- name: PHI Exposure Check
run: npx jest --testPathPattern='tests/security/phi' --bail --ci
- name: Data Integrity
run: npx jest --testPathPattern='tests/data-integrity' --bail --ci
# HIGH gates — 95%+ required, custom threshold check
# HIGH gates — 95%+ required
- name: Clinical Workflows
run: |
TMP_JSON=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$TMP_JSON" || true
TOTAL=$(jq '.numTotalTests // 0' "$TMP_JSON")
PASSED=$(jq '.numPassedTests // 0' "$TMP_JSON")
if [ "$TOTAL" -eq 0 ]; then
echo "::error::No clinical tests found"; exit 1
fi
RATE=$(echo "scale=2; $PASSED * 100 / $TOTAL" | bc)
echo "Pass rate: ${RATE}% ($PASSED/$TOTAL)"
if (( $(echo "$RATE < 95" | bc -l) )); then
echo "::warning::Clinical pass rate ${RATE}% below 95%"
fi
- name: Integration Compliance
run: |
TMP_JSON=$(mktemp)
npx jest --testPathPattern='tests/integration' --ci --json --outputFile="$TMP_JSON" || true
TOTAL=$(jq '.numTotalTests // 0' "$TMP_JSON")
PASSED=$(jq '.numPassedTests // 0' "$TMP_JSON")
if [ "$TOTAL" -eq 0 ]; then
echo "::error::No integration tests found"; exit 1
fi
RATE=$(echo "scale=2; $PASSED * 100 / $TOTAL" | bc)
echo "Pass rate: ${RATE}% ($PASSED/$TOTAL)"
if (( $(echo "$RATE < 95" | bc -l) )); then
echo "::warning::Integration pass rate ${RATE}% below 95%"
fi
Anti-Patterns
- Skipping CDSS tests "because they passed last time"
- Setting CRITICAL thresholds below 100%
- Using
--no-bailon CRITICAL test suites
- Mocking the CDSS engine in integration tests (must test real logic)
- Allowing deployments when safety gate is red
- Running tests without
--coverageon CDSS suites
Examples
Example 1: Run All Critical Gates Locally
npx jest --testPathPattern='tests/cdss' --bail --ci --coverage && \
npx jest --testPathPattern='tests/security/phi' --bail --ci && \
npx jest --testPathPattern='tests/data-integrity' --bail --ci
Example 2: Check HIGH Gate Pass Rate
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$tmp_json" || true
jq '{
passed: (.numPassedTests // 0),
total: (.numTotalTests // 0),
rate: (if (.numTotalTests // 0) == 0 then 0 else ((.numPassedTests // 0) / (.numTotalTests // 1) * 100) end)
}' "$tmp_json"
# Expected: { "passed": 21, "total": 22, "rate": 95.45 }
Example 3: Eval Report
## Healthcare Eval: 2026-03-27 [commit abc1234]
### Patient Safety: PASS
| Category | Tests | Pass | Fail | Status |
|----------|-------|------|------|--------|
| CDSS Accuracy | 39 | 39 | 0 | PASS |
| PHI Exposure | 8 | 8 | 0 | PASS |
| Data Integrity | 12 | 12 | 0 | PASS |
| Clinical Workflow | 22 | 21 | 1 | 95.5% PASS |
| Integration | 6 | 6 | 0 | PASS |
### Coverage: 84% (target: 80%+)
### Verdict: SAFE TO DEPLOY